Index

B

bin_2d() (in module cell_analysis_tools.image_processing)

bin_image() (in module cell_analysis_tools.flim)

C

cell_analysis_tools.flim module cell_analysis_tools.image_processing module cell_analysis_tools.io module cell_analysis_tools.metrics module

cell_analysis_tools.morphology module cell_analysis_tools.visualization module compare_images() (in module cell_analysis_tools.visualization) compare_orig_mask_gt_pred() (in module cell_analysis_tools.visualization) compute_pca() (in module cell_analysis_tools.visualization) compute_tsne() (in module cell_analysis_tools.visualization) compute_umap() (in module cell_analysis_tools.visualization)

D

dice() (in module cell_analysis_tools.metrics)

draw_universal_semicircle() (in module cell_analysis_tools.flim)

E

estimate_and_shift_irf() (in module cell_analysis_tools.flim)

F

fill_and_label_rois() (in module cell_analysis_tools.image_processing) four_color_theorem() (in module cell_analysis_tools.image_processing)

four_color_to_unique() (in module cell_analysis_tools.image_processing) fractal_dimension_gray() (in module cell_analysis_tools.morphology)

H

h_index() (in module cell_analysis_tools.metrics)

h_index_single_weighted() (in module cell_analysis_tools.metrics) hausdorff_distance() (in module cell_analysis_tools.metrics)

I

ideal_sample_phasor() (in module cell_analysis_tools.flim)

image_show() (in module cell_analysis_tools.visualization)

J

jaccard() (in module cell_analysis_tools.metrics)

K

kmeans_threshold() (in module cell_analysis_tools.image_processing)

L

lifetime_to_phasor() (in module cell_analysis_tools.flim) load_image() (in module cell_analysis_tools.io)

load_sdt_data() (in module cell_analysis_tools.io) load_sdt_file() (in module cell_analysis_tools.io)

M

mask_to_outlines() (in module cell_analysis_tools.visualization) module cell_analysis_tools.flim cell_analysis_tools.image_processing cell_analysis_tools.io cell_analysis_tools.metrics cell_analysis_tools.morphology cell_analysis_tools.visualization

N

normalize() (in module cell_analysis_tools.image_processing)

P

percent_content_captured() (in module cell_analysis_tools.metrics) phasor_calculator() (in module cell_analysis_tools.flim)

phasor_calibration() (in module cell_analysis_tools.flim) phasor_to_rectangular() (in module cell_analysis_tools.flim)

R

read_asc() (in module cell_analysis_tools.io) rectangular_to_phasor() (in module cell_analysis_tools.flim) regionprops() (in module cell_analysis_tools.morphology) regionprops_omi() (in module cell_analysis_tools.flim)

remove_horizontal_vertical_edges() (in module cell_analysis_tools.image_processing) remove_small_areas_fill_regions() (in module cell_analysis_tools.image_processing) rgb2gray() (in module cell_analysis_tools.image_processing) rgb2labels() (in module cell_analysis_tools.image_processing)

S

sum_pool_3d() (in module cell_analysis_tools.image_processing)

T

total_error() (in module cell_analysis_tools.metrics)